liv: Cartoon of a smiling woman with a long plait, teaching about p53 (teacher)
So the first online course of our giant international Covid training project is live: behold The power of genomics to understand the Covid-19 pandemic.

I'm mainly linking to show off, but you're welcome to join if you'd like. It's pitched at a scientific audience but if you have high school biology and some general curiosity you'll probably make sense of most of it. Totally free of cost and it doesn't matter if you poke at it but don't complete it.

Getting it over the line has been a massive enterprise; basically it's involved three months of shifting our entire way of working from a local thing mostly run by me and senior minion, to this incredibly complex collaboration with the COG consortium, already a huge mega-group across many different institutions. Plus we are desperately trying to decolonize! all! the! things! and work on an equal level with experts from all over the world, even though most of the UK team are used to a Eurocentric model of training.

I mean one of the reasons it's slightly delayed is that Omicron hit in the middle of the development process. The African-led group who first identified the variant got extremely angry with the rich countries that punished their disclosure instead of helping them with the crisis. Which was entirely justified but we got somewhat caught in the backlash and a bunch of previously enthusiastic African collaborators decided they didn't trust Europeans at all any more. We are honestly trying not to be parasitic White Saviours, but it's a learning curve and it's basically fair that we've run out of benefit of the doubt and second chances with some people.

Anyway, work discussions and planning have reminded me that in my personal life, I've spent the pandemic years creating and accumulating a huge pile of teaching resources, while I'm teaching on Zoom and don't have access to books, or the books available aren't suitable for what I'm trying to achieve. But it's all a big mess just dumped into a directory on my computer.

I know I have information management people among my circle. Would you be willing to give me some hints for organizing all my electronic teaching materials? I feel like I should know this kind of thing based on my professional experience, but actually... I've either been in large institutions and relied on infrastructure and expert support, or I've been in backwaters who never really had an IM strategy and just got away with things being in a bit of a muddle because the scale was small enough that it never got unmanageable.

What I need is some kind of sensible plan for my personal materials, so I can find them again and adapt and reuse them. I am willing to spend some money but not five figure sums on subscribing to a service meant for institutions, not individuals. It needs to be something fairly easy to use; if even starting to tag and store things becomes a massive faff I'll end up just not doing it. I would strongly prefer something where the architecture is on my own computer and not in the cloud. I don't have a massive amount of stuff in terms of file size, just a very large number of mostly text files. Backups would be good but that's not the main part of the problem I'm trying to solve.

And-a-pony level would be something that can easily manage a mix of English language and Hebrew language materials, but I can probably catalogue things in English and use transliteration as appropriate.

Birthday

Dec. 17th, 2021 08:17 pm
liv: Table laid with teapot, scones and accoutrements (yum)
I am generally not feeling sparkly or enthusiastic, for probably obvious reasons. It's my 43rd birthday in ten days and I haven't even started organizing anything. So I'm going to resort to asking the the internet to make my decisions for me like we're back in the 2000s.

help me plan )

Anyway, what should I do? Words of encouragement greatly appreciated
liv: A woman with a long plait drinks a cup of tea (teapot)
So, are there any real, non-parody guides or even training for how to communicate effectively with autistic people?

disclaimers )

I'm not sure if it's even legitimate to ask this, but if you were able to change something about the way I communicate to be better for autistic people, what would you (want me to) change? Do you know of any resources aimed at teaching non-autistic people to do better, that use a neurodiversity type model and centre autistic people?

*Note on terminology: I have some autistic friends who insist that the opposite of 'autistic' is 'allistic', and some autistic friends who find 'allistic' offensive and strongly prefer 'neurotypical', and both those views are completely valid but I'm going with 'non-autistic' as the least-bad compromise for how to describe myself.
liv: ribbon diagram of a p53 monomer (p53)
I'm asking specific questions here and not looking for general speculation and chat about the topics. Ideally I would like UK-relevant answers too; sorry that makes this post boring for some of my audience.

some of them are Covid-related )

TIA, people. I'm bored of this so bored. But since our leadership have surrendered to the virus, I need to figure out how to carve out some kind of life for myself.
liv: alternating calligraphed and modern letters (letters)
I have been trying to play Minecraft with the kids. I love the idea of playing, exploring and building and fighting in a shared world, it's basically the dream. But in practice I absolutely cannot get it to work reliably. I am starting to wonder whether I'm turning into the 21st century equivalent of middle-aged people who need to get small children to program the video recorder for them!

frustration )

Halp?!
liv: Cartoon of a smiling woman with a long plait, teaching about p53 (teacher)
So back in that weird twilight zone between the Before Times and the Time of Isolation, I asked for volunteers to beta read a new free online course I was producing at work. During the weird 10 months since, we have been working somewhat interruptedly on new material, and we now have two new courses for release in the coming weeks. I'm looking for beta testers again.

details )

Other than doing some good for the world, what you get out of it is a £25 Amazon voucher. So in order to get paid you need to be in a position to receive and spend an Amazon voucher. We might possibly be able to acquire vouchers for other countries' versions of Amazon, or else I can informally arrange to swap to something more locally useful. But it's not employment, it's a volunteer thing with a small token of appreciation.

Last year I had way more volunteers than I actually had space for, so thank you all for being awesome. Since there are two courses concerned I can now take on up to 8 people. I will give priority to people who wanted to help before but were turned away since we had too many volunteers.

Feel free to ask questions in the comments, but if you actually want to sign up you need to interact with my work persona, so I'll ask you to PM me about arranging that. You're also welcome to pass the request on to anyone else who might be interested.
liv: alternating calligraphed and modern letters (letters)
Can anyone suggest to me:
  • A text editor / word processor that runs under Linux and handles Hebrew and bidirectional text?
  • A period and menstrual cycle tracking app where all the data is local only and never transmitted to the cloud?

    more detailed spec )

    I don't mind social bonding by chatting generally about related software, but I am mainly looking for actual suggestions that meet my requirements. Please don't bother telling me I should use a different operating system though. I'm not really interested in opinions about Ubuntu, Linux or Android.
  • liv: A woman with a long plait drinks a cup of tea (teapot)
    So my partners and metamour had a baby this week! It's very exciting, but also very weird because we are quarantined apart. I had been a bit nervous and a lot excited about forming a relationship with a child from birth (I suppose that was the case with my siblings, but the period when I was aged 2-6 doesn't count in quite the same way.) But now that's not really going to happen; I'm planning to carry on waving to her from 2m away, but babies don't bond to people who occasionally wave from 2m away.

    There's no point being sad about no baby cuddles; I'm already properly sad about having to stay physically distanced from my actual partners and the middle two children whom I miss desperately. Family life during a a pandemic is weird, but that's hardly news.

    I started spending extended time with her older siblings when they were 2 1/2 and 6 (now 8 and 11). The thing I found most difficult about interacting with younger children is how emotionally intense they are. Does anyone have any advice (from personal experience or theoretical knowledge) about how to cope when people you care about find every small setback or frustration devastatingly upsetting? It's something I want to do better this time. Note that I don't want advice on how to prevent small children from inconveniently expressing emotions around me, I just want to find better ways of handling my own feelings.

    It's probably a skill worth learning in general, because with a terrifying global pandemic everybody is more emotionally on edge than usual. And of course it's something that all parents must manage somehow. I just... don't see it talked about a lot in eg parenting guides.
    liv: Cartoon of a smiling woman with a long plait, teaching about p53 (teacher)
    ETA: You guys are amazing. I was really not expecting to get so many volunteers! I have more than enough people for now. I'm happy to add any additional names to the list for future opportunities. I can't add any more volunteers for this course, otherwise it would end up being all my friends which isn't great for diversity.


    My awesome job involves creating free online courses about genomics. The first course I've been fully in charge of is about to go live, and it needs some final quality checks. It's quite exciting IMO: it's about using genomics to identify and avoid antibiotic resistance.

    We need people who can put in a couple of hours in the next week, and just play around with the course and see if there are any obvious problems, whether that's technical issues like display problems for your particular hardware and software, or conceptual problems like confusing instructions or something that doesn't make sense. We are definitely not expecting any one individual to go through the whole course in detail, and we're not looking for copy editing or proofreading. I mean, if you have the sort of brain that can't help spotting typos, we don't mind reports of those, but we're mainly looking for something more general than that.

    We want people from all backgrounds, so a mix of people who know something about microbiology and genomics, and people who have no idea. I will say that the course is fairly technical, though, so you probably don't want to volunteer if sciencey stuff is hateful or scary to you. We are especially happy to have beta readers who aren't completely fluent in English to be more representative of our target audience.

    Other than doing some good for the world, what you get out of it is a £25 Amazon voucher. So in order to get paid you need to be in a position to receive and spend an Amazon voucher. We might possibly be able to acquire vouchers for other countries' versions of Amazon, or else I can informally arrange to swap to something more locally useful. But it's not employment, it's a volunteer thing with a small token of appreciation.

    Feel free to ask questions in the comments, but if you actually want to sign up you need to interact with my work persona, so I'll ask you to PM me about arranging that. You're also welcome to pass the request on to anyone else who might be interested. The number of available slots is somewhat flexible, probably in the range of 3-5.

    More joy

    Feb. 6th, 2020 06:18 pm
    liv: cup of tea with text from HHGttG (teeeeea)
    Everything is on fire, and besides I had half my tooth removed today. (Which is particularly annoying because it means I have to go to hospital to have the other half removed.)

    So I reckon it's time for some sharing of joy. If you feel like participating, please add to the comments something that made you smile recently. Or an offer or request for something that might bring you more joy.

    I'll start: Here's a really clever mashup of Paint it black with Back to black performed by a singer with a gorgeous voice. Thanks to [personal profile] cragdu for linking to it.

    I can offer you recommendations if you pick a topic (eg books, music, people to follow on DW). Or I can send you or your favourite cause a small amount of money if you give me a convenient method of transferring it.
    liv: In English: My fandom is text obsessed / In Hebrew: These are the words (words)
    So does anyone know anything about the prohibition on writing down halachot / writing down the oral Torah? Behind the cut is deeply technical stuff, and I'm sufficiently confused about it that I don't think I can explain if you can't follow my description. But there's quite a few people reading this who are likely to know more about the topic than I do, so I'm posting about it to ask for help.

    religious nerdery )

    Help?
    liv: alternating calligraphed and modern letters (letters)
    So [personal profile] jack and I hatched a plan to expand our cultural horizons by watching films from as many different countries as possible. We're working our way down the list of countries from the biggest by population. I don't expect we'll get very far; we don't watch more than half a dozen films in a typical year. But even if we watch films from 20 new countries we wouldn't have seen otherwise, that's still a win.

    Of course, we ran into an edge case at the very first step because it turns out that a lot of famous "Chinese" films are in fact made in Taiwan or Hong Kong. And I'm reasonably convinced that Taiwan ought to be defined as a separate country, and HK probably too. We ended up with House of flying daggers, directed by Yimou Zhang, which is at least partly Chinese from China.

    I enjoyed House of flying daggers. I loved the stylized and very beautiful martial arts scenes, and the amazing costumes, and the chemistry between Jin and Mei. And I loved the first two thirds of the plot, where everybody is multiply double-crossing everybody else. I particularly liked that Mei gets to be a hyper-competent martial arts fighter, not just a damsel. What I didn't love was the ending where it turns into a stupid love triangle, and Mei ends up sacrificing herself for no particularly meaningful cause, since the jealous man who is in love with her kills her true love anyway and it doesn't particularly help the rebellion.

    We plan to watch an Indian film this evening. Does anyone have any favourites to recommend? I have a somewhat low tolerance for explicit onscreen violence, and for a date we'd prefer films that aren't about horribly depressing bits of history. Otherwise, even if it's a really obvious classic there's a pretty high chance I haven't seen it, though [personal profile] jack might have (we didn't pick Crouching Tiger, Hidden Dragon for China, since he's already seen that.) Equally we've left it a bit late to plan, so ideally something we can stream instantly this evening, rather than something we'd need to order from the internet.

    (I wouldn't say no to recommendations from the next several large countries. I think we can probably come up with an US American film on our own, but I have no idea what's good from Indonesia, Brazil, Pakistan or Nigeria.)
    liv: alternating calligraphed and modern letters (letters)
    Three topics about learning I'd like some advice on:

    where I'm stuck )
    liv: Cartoon of a smiling woman with a long plait, teaching about p53 (teacher)
    So two years ago I left my tenured academic job because it was making me miserable and requiring me to commute 300 miles a week. And I took up a fixed term job working on an interesting project about using modern teaching methods to make sure all students, including minorities, have a good experience at university. The project has come to an end, and it has been pretty much everything I hoped for; my CV is much more interesting and diverse now, and includes some leadership experience.

    So I'm able to apply for a much wider range of jobs, and more senior jobs, now. And I'm sometimes getting shortlisted but so far nobody actually wants to offer me a job. So I'm going to be out of work from the end of the month, and I don't know what to do next.

    more details; mentions money )
    liv: Table laid with teapot, scones and accoutrements (yum)
    So my lovely husband had a birthday, and we had a tasting menu at Navadhanya. I'm really pleased [personal profile] ghoti_mhic_uait discovered a restaurant which is so well suited to our tastes. We had a bottle of Indian white wine, and I should probably be less surprised that Indian wine exists, but it was merely pleasant rather than exciting. I think in future I will go back to drinking their extremely exciting passion-fruit and chilli lassi.

    Then at the weekend we had a birthday party; we seem to be reliably hitting really good house parties these days. Lots of people from different bits of our social group, lots of really good interactions and conversations.

    The third part of celebrating [personal profile] jack is that he asked for a spa treat for his birthday. Does anyone have any recommendations at least vaguely local to Cambridge?

    I've never really found the idea of a spa appealing so I don't know anything about it. Ideally we want to avoid anything too far in the "woo" direction; we're looking for someone who is going to do nice things to muscles, not chakras or auras or chi or that sort of thing. I don't really want to join in with the massage because I have some mild but annoying trauma around massage, but if it's possible to pay for a couple of hours of hanging out in a nice relaxing environment then I could keep [personal profile] jack company.

    The most plausible option I've found so far is The Glassworks. They don't seem to offer the option of just paying for spa time, though. I would be glad to hear if anyone's been there and can tell us personally if it's any good.
    liv: Cartoon of a smiling woman with a long plait, teaching about p53 (teacher)
    One of the things I love about my job is that when you're helping people to redesign their teaching they ask you for advice about all kinds of random things. This one I think I need to crowdsource:

    My colleague is running an exchange trip where she's taking some of her students to Washington DC along with some students from a Southern US state. She wants to take some small gifts / prizes for the American students.

    So my question to American or American-knowledgeable friends is, if you were an American college student, what small, inexpensive, transportable item would you be excited to receive from English visitors? Are there any (snack) foods you think of as excitingly and exotically British?

    And to my compatriots, what should my colleague take that will seem like a nice souvenir of England or the UK? Particularly, can you think of anything that is typical of Cambridge the town but isn't about Cambridge Uni?
    liv: ribbon diagram of a p53 monomer (p53)
    I have a spreadsheet with approx forty thousand rows. Around 6000 of them are irrelevant - they're mixed in with the rest, but are identifiable based on data in one of the columns. The data covers three years. The years are not recorded as proper dates, but as plain text saying things like 2015/16.

    My task is that for each year, I need to count the unique values in one of the columns. This column contains only text, no blanks. It's not made out of meaningful English words, but serial numbers containing letters and digits. The values in each column are repeated anywhere from 1 to 60 times; I just want to know how many different serial numbers there are, not overall, but separately for each year.

    detail, with example )

    Does anyone have any suggestions for how to approach this?

    (The reason why I'm trying to wrangle this myself rather than delegating it to someone who has relevant expertise is, well, annoying work politics. But the fact remains that I need to do it.)

    Recorder

    Apr. 24th, 2017 01:20 pm
    liv: alternating calligraphed and modern letters (letters)
    So the wonderful amazing [personal profile] ghoti_mhic_uait gave me a proper alto recorder as an afikoman present. I am slightly awkward about it because an actual musical instrument is a bit bigger than the sorts of things my family generally expect as Passover presents – it's a gift-giving occasion, yes, but it's not anything like on the scale of Christmas. But I am also really really happy, it's the most absolutely perfect present.

    babbling about me and music )

    And I'm allowed to play the recorder. Just like I learned with piano all those years ago, I don't have to be a brilliant performing soloist, I can just play because I want to. And with work, with amazingly satisfying work, better than any video game, I can get to the point where my playing sounds at least pleasant. But I do in fact want to focus on more social sorts of playing, not learning a bunch of sonatas to a mediocre standard.

    So does anyone have any recs of social sorts of music? Melodies of songs, perhaps, or even something aimed directly for people who want to play recorder to accompany singers? The readthrough people have a songbook, right, with dots in? Would it be possible to obtain a copy? I'm happy to pay for music but I'm spoilt for choice so I need some ideas first. And I am somewhat interested in online tutorials though I think I can mostly learn fine just by practising pieces, cos it turns out I know how do that. I like baroque music a lot, and there happens to be quite a lot available for recorder, but I am not wedded to only playing baroque, any style is fine, and I'm quite positively interested in recorder versions of pop music, if that exists. (And if it's set for descant, well, all that rusty music theory means that I do in fact know how to transpose.)
    liv: Bookshelf labelled: Caution. Hungry bookworm (bookies)
    So my two former bar mitzvah students want to carry on with Hebrew now they've both completed their ceremonies. They've said they'd like to do a bit more conversational modern Hebrew as well as just practising prayerbook reading. Does anyone have any recommendations for textbooks?

    The boys are 13 and 15, both reasonably academically able and reasonably committed. They can read fairly fluently, but have very little vocab or grammar at the moment. They're also extremely busy and probably won't have huge amounts of time for practice in between their fortnightly lessons. My options at the moment are:
    The textbook recommended by the GCSE exam board. I'd generally like the boys to be thinking about GCSE sort of level, not that they hugely have to pass exams but as a streching, but attainable, target. The problem is that the book looks incredibly dated and dull and I don't feel inspired to teach from it!

    Or Routledge Introductory Course in Modern Hebrew. I think this is basically aimed at beginners, but beginners who are university students or otherwise quite advanced in general language skills. It's really quite heavy on grammar, and might be overkill for a couple of years of informal lessons for teenagers.

    I can't find anything I like better than these two options. I don't want a course that is primarily audio for self-learning, because I'm going to be there teaching and keeping up reading fluency is a big priority. And I don't want just a vocab list or beginners' dictionary. The younger boy suggested using a tourist phrasebook, which might work but ideally I'd like something more like a textbook and less like lists of phrases to rote learn.

    Secondly, I still have not succeeded in giving the younger lad his bar mitzvah present, because everything I could think of is out of print and not for sale for reasonable money. I would like to give him a good work of popular non-fiction, something enjoyable to read but also informative. He's quite interested in politics and world affairs, which is a subject I know little about. And he's pretty bright but not especially precocious, I think he'd get more out of something accessible or even aimed at teenagers, than something hardcore academic.

    I'm thinking something about the level of Jared Diamond's Guns, germs and steel, except not that because I'm now aware that Diamond not only plays fast and loose with scholarly accuracy, he conducted some rather unethical ethnographic research and published identifying stories about his subjects without their permission. And I have in mind that there used to be a journalist who did short programmes on Radio 4 about US politics and culture, and that he died a few years ago (?) and that prior to that he had written a book of anecdotes that this young man might enjoy, but that's not enough information to shake his name out of Google, does anyone have any clue whom I'm talking about?

    So. Anyone who's taught conversational Hebrew, any recs? And in a less specialist query, what's the most interesting popular non-fiction book you've read lately?
    liv: cast iron sign showing etiolated couple drinking tea together (argument)
    So something is sending vast quantities of spam from my email address. Does anyone have any advice?

    details )

    Soundbite

    Miscellaneous. Eclectic. Random. Perhaps markedly literate, or at least suffering from the compulsion to read any text that presents itself, including cereal boxes.

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